Glyma04g08380 - SoyBase

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Report for Sequence Feature Glyma04g08380

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6554183
stop:	6555506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32690	AT	Annotation by Michelle Graham. TAIR10: hemoglobin 3 \| chr4:15765486-15766862 FORWARD LENGTH=175	SoyBase	E_val: 2.00E-72	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0015671	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxygen transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005344	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen transporter activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF01152	PFAM	Bacterial-like globin	JGI		ISS
UniRef100_I1JUQ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUQ8_SOYBN	SoyBase	E_val: 7.00E-137	ISS
UniRef100_Q6QDC2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-on-2 hemoglobin n=1 Tax=Glycine max RepID=Q6QDC2_SOYBN	SoyBase	E_val: 3.00E-96	ISS

Expression Patterns of Glyma04g08380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g08380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g079200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g08380

Limit To All Plant Sequences

>Glyma04g08380.2   sequence type=transcript   gene model=Glyma04g08380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACGGGTTGGGTTGGGTCGGATAAGGAATATCCGTGGAGAAGATCTCATTTTATATACTTTAAATAAGTTATAAATCAAGTTACTAATTAAATGAAGTTTCTATTGGCATGCGTAGTTGAAAAGAAGATGATGTGATGTTGTATTGAGGGAGTGATAATTGGCGATGCAGAGTCTGCAACAGAAGGCCTCTGAATGGAGTGGAGTTTCCATAGCTGATGCTTTTGCCATAGACGAGGCCAATTTGTTTCACAAGCTTGGCCTTCAAACCTTGGTTAATCTCTCTACCAATTTCTACAACAGGGTGTATGACGACGACCAAGAGTGGTTTCGTTCAATATTTGCCAATTCTGACAAACAGAACGCAATTCAGAACCAGATCGAGTTCCTCGTCCAGAGAATGGGTGGCCCCACTCTCTATTCTCAAAGAAGAGGGCACCCTGCACTAATCGCTAGACATCGACCATTTCCTCTCACGCATGAAGCTGCAAACAGGTGGTTACATCATATGGGACAAGCATTGGACAGTACCTCAGCCATAGATGATGACTCAAAGATCAAACTCATCAACTTTTTCAGGCACACTGCATATTTCCTTGTGGCTGGAGTTGAGCAAAAGGATCAAAACTTTCACGTACCGTGTAAGGATGCAGCCCTGAAGCAGCACCCATGTAAAAACTTTTAGCATTTTTCTCTTTGTGCAACGTTGACAAGAATAAGGTATCATCATATCAGATGTCAAATACAATGTTCGATGATCAGTTTGTATTTGAGGATATTCTAAACTCAAGCATTATTATGTTTCATAAACGAATCTCGTTAATTAGTTTGTTACGATAAATTGTTACAAATCAGGAACAGTTAGGATTAACAAAATAAGTGCTAATTAATATTGTGGTGCATGTGTATATAAAGTAAGGTGGTCAGTGTGCATAAAAAAAAAAGATAGAAAAGAGTAACGAGCGTAACTTTATTTAAGTTCAAGGAATTTTAATGTAATTTACCCTATGTTTTAATGCGTCCCACATAAAAAATAAAATAAAAAAGAGGAAAAAAGTTATTCTCTATCATACAC

Coding sequences of Glyma04g08380

Limit To All Plant Sequences

>Glyma04g08380.1   sequence type=CDS   gene model=Glyma04g08380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGTCTGCAACAGAAGGCCTCTGAATGGAGTGGAGTTTCCATAGCTGATGCTTTTGCCATAGACGAGGCCAATTTGTTTCACAAGCTTGGCCTTCAAACCTTGGTTAATCTCTCTACCAATTTCTACAACAGGGTGTATGACGACGACCAAGAGTGGTTTCGTTCAATATTTGCCAATTCTGACAAACAGAACGCAATTCAGAACCAGATCGAGTTCCTCGTCCAGAGAATGGGTGGCCCCACTCTCTATTCTCAAAGAAGAGGGCACCCTGCACTAATCGCTAGACATCGACCATTTCCTCTCACGCATGAAGCTGCAAACAGGTGGTTACATCATATGGGACAAGCATTGGACAGTACCTCAGCCATAGATGATGACTCAAAGATCAAACTCATCAACTTTTTCAGGTTTGTTTTCTTCCCCCAAGTACCTCTTCATTTCATGGAGAACACGTTCATAACAACCTTAATTACTTTTTCAGGCACACTGCATATTTCCTTGTGGCTGGAGTTGAGCAAAAGGATCAAAACTTTCACGTACCGTGTAAGGATGCAGCCCTGA

>Glyma04g08380.2   sequence type=CDS   gene model=Glyma04g08380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGTCTGCAACAGAAGGCCTCTGAATGGAGTGGAGTTTCCATAGCTGATGCTTTTGCCATAGACGAGGCCAATTTGTTTCACAAGCTTGGCCTTCAAACCTTGGTTAATCTCTCTACCAATTTCTACAACAGGGTGTATGACGACGACCAAGAGTGGTTTCGTTCAATATTTGCCAATTCTGACAAACAGAACGCAATTCAGAACCAGATCGAGTTCCTCGTCCAGAGAATGGGTGGCCCCACTCTCTATTCTCAAAGAAGAGGGCACCCTGCACTAATCGCTAGACATCGACCATTTCCTCTCACGCATGAAGCTGCAAACAGGTGGTTACATCATATGGGACAAGCATTGGACAGTACCTCAGCCATAGATGATGACTCAAAGATCAAACTCATCAACTTTTTCAGGCACACTGCATATTTCCTTGTGGCTGGAGTTGAGCAAAAGGATCAAAACTTTCACGTACCGTGTAAGGATGCAGCCCTGAAGCAGCACCCATGTAAAAACTTTTAG

Predicted protein sequences of Glyma04g08380

Limit To All Plant Sequences

>Glyma04g08380.1   sequence type=predicted peptide   gene model=Glyma04g08380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSLQQKASEWSGVSIADAFAIDEANLFHKLGLQTLVNLSTNFYNRVYDDDQEWFRSIFANSDKQNAIQNQIEFLVQRMGGPTLYSQRRGHPALIARHRPFPLTHEAANRWLHHMGQALDSTSAIDDDSKIKLINFFRFVFFPQVPLHFMENTFITTLITFSGTLHISLWLELSKRIKTFTYRVRMQP*

>Glyma04g08380.2   sequence type=predicted peptide   gene model=Glyma04g08380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSLQQKASEWSGVSIADAFAIDEANLFHKLGLQTLVNLSTNFYNRVYDDDQEWFRSIFANSDKQNAIQNQIEFLVQRMGGPTLYSQRRGHPALIARHRPFPLTHEAANRWLHHMGQALDSTSAIDDDSKIKLINFFRHTAYFLVAGVEQKDQNFHVPCKDAALKQHPCKNF*

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